PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC81_p8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 187aa    MW: 22308.5 Da    PI: 10.3074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC81_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.97.7e-11104142348
       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                +GV++ k + +W A I++      +++++lg+f + eeAa+++++
  RrC81_p8 104 MRGVYY-K-NMKWQAAIKVE-----KRQIHLGTFSSQEEAARLYDR 142
               79**96.5.7*********6.....6******************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-5103142IPR001471AP2/ERF domain
SMARTSM003806.0E-4103153IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-8104143IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-6105142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MITGIPNPNG VAAYSPVPKE ELLRHYLFWF WQKTPIVEGS RSQRQRTPSK YLMQFRSDSS  60
AISPDDYGSI SPKMEQDVCD SDQPLKRRKR HRRKQVKNQE PCLMRGVYYK NMKWQAAIKV  120
EKRQIHLGTF SSQEEAARLY DREPNFELSE EDKRKLKQQS WEGFLACTRR KIINKKPKRR  180
MEQEELE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0793491e-59AL079349.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F25G13, partial sequence (ESSA project).
GenBankAL1615351e-59AL161535.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 35.
GenBankCP0026871e-59CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602110.11e-102PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_013602109.11e-102PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_013602108.11e-102PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP94e-65ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A078IFC51e-102A0A078IFC5_BRANA; BnaC08g08940D protein
TrEMBLA0A0D3DLF61e-102A0A0D3DLF6_BRAOL; Uncharacterized protein
STRINGBra034895.1-P5e-94(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.14e-58ERF family protein